I haven't read shippuden in so long X_X How about we just say that, Lucien, Is also a Jinjuriki but his goal is to harness all the tailed beasts within his body?

Alright, since it would give both of our characters incentive to fight :)

Now the question is, what should we use as a skeleton, A starting point and plan some future events.. x3

Well, skeleton wise (or starting point, not sure which where this would go), I was thinking perhaps we have a nice detailed description of the village, like how it came to be, its kage, the setting of it, etc.

Hmm, That sounds like a neat Idea, I am sure I could throw something together.

Great :)
Now future event wise, to start off with, after they've come to terms with one another, they could possibly take on a freelance mission since they would need the funds to live off of and since they can't exactly walk freely in their own village?

I am all caught up with shippuden.. Um, That sounds like a decent plan, but lets worry about the meet up first? xD!

As, for the village description, I could throw it into the Skeleton..

Alrighty, lol.
They the first meet, we decided on my character sent out as a tracker ninja to track yours and bring her back right?

Correct, And something happens along the way that prevents them in doing so

I'm having trouble thinking of what could happen, like say if a separate village attacks them in hopes of extracting their secrets from them?

Yes, we could do that, Or we could have the story line during a ninja war or something...

Oh, a ninja war sounds good O:

That way they could have people to fight other than Lucien..

Yes, that sounds like a good plan :)

Also, it would keep me from scaring you away with Lucien...

Wow, he that diabolical? XD